1 Response_reg#1
6-117 aa · 112 aa · 49.1% of protein
Raw token
Response_reg:6:1.4e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS09095
Response regulator OmpR family
Blautia obeum · GCF_003469845
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS09095Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:148:4.55e-30:221:77:77- Raw architecture: Response_reg:6:1.4e-28:117:113:111#Trans_reg_C:148:4.55e-30:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000006.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176684-178640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_09120RefSeq proteinWP_015542269.1
Context group ID
GCF_003469845::NZ_QSKF01000006.1::G00044Context members
DW740_RS09090DW740_RS09095
Partner locus tags
DW740_RS09090DW740_RS09095
Partner old locus tags
DW740_09115DW740_09120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015542269.1Primary protein accession used for annex mappings.
UniProt accessionA0A414ELG3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414ELG3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS09095Primary locus identifier stored in the genes table.
Old locus tagDW740_09120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000006.1Sequence record reported by the local genomic context database.
Genomic interval177 954-178 640 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 684-178 640 ntGCF_003469845::NZ_QSKF01000006.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000006.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000006.1All displayed genes belong to this local TCS context.
Neighborhood span176 684-178 640 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 684 nt178 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS09090GCF_003469845#DW740_RS09090
HKClassic
176 684-177 964 nt · Reverse (-)
DW740_RS09095GCF_003469845#DW740_RS09095
RROmpRCurrent focus
177 954-178 640 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS09995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302612
Simplified PFAM architecture for RROC_1302612
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-110] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1302612
- Positioned domains: Response_reg 6-110 ; Response_reg 6-110 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS09995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key