1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:7.11e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS07675
Response regulator OmpR family
Blautia obeum · GCF_003469845
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS07675Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:6.47e-37:227:77:77- Raw architecture: Response_reg:5:7.11e-41:114:111:111#Trans_reg_C:151:6.47e-37:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140622-142742Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_07700RefSeq proteinWP_015543287.1
Context group ID
GCF_003469845::NZ_QSKF01000005.1::G00042Context members
DW740_RS07670DW740_RS07675
Partner locus tags
DW740_RS07670DW740_RS07675
Partner old locus tags
DW740_07695DW740_07700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015543287.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J700Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J700_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS07675Primary locus identifier stored in the genes table.
Old locus tagDW740_07700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000005.1Sequence record reported by the local genomic context database.
Genomic interval142 053-142 742 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 622-142 742 ntGCF_003469845::NZ_QSKF01000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000005.1All displayed genes belong to this local TCS context.
Neighborhood span140 622-142 742 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 622 nt142 742 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS07670GCF_003469845#DW740_RS07670
HKClassic
140 622-142 049 nt · Reverse (-)
DW740_RS07675GCF_003469845#DW740_RS07675
RROmpRCurrent focus
142 053-142 742 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS16055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247372
Simplified PFAM architecture for RROC_1247372
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1247372
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS16055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key