1 sCache_like#1
43-139 aa · 97 aa · 17.2% of protein
Raw token
sCache_like:43:0.0000000000829:139:104:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS05270
Histidine kinase, Classic
Blautia obeum · GCF_003469845
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003469845#DW740_RS05270Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 565 aa (48.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation3 items
2 HisKA#2
341-406 aa · 66 aa · 11.7% of protein
Raw token
HisKA:341:0.00000000000000135:406:66:643 HATPase_c#3
455-562 aa · 108 aa · 19.1% of protein
Raw token
HATPase_c:455:5.89e-31:562:108:109- Raw architecture: sCache_like:43:0.0000000000829:139:104:114#HisKA:341:0.00000000000000135:406:66:64#HATPase_c:455:5.89e-31:562:108:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003469845::NZ_QSKF01000003.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span238340-240037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_05295RefSeq proteinWP_243037309.1
Context group ID
GCF_003469845::NZ_QSKF01000003.1::G00031Context members
DW740_RS05270
Partner locus tags
DW740_RS05270
Partner old locus tags
DW740_05295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243037309.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS05270Primary locus identifier stored in the genes table.
Old locus tagDW740_05295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000003.1Sequence record reported by the local genomic context database.
Genomic interval238 340-240 037 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span238 340-240 037 ntGCF_003469845::NZ_QSKF01000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span238 340-240 037 nt1 698 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 340 nt240 037 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW740_RS05270GCF_003469845#DW740_RS05270
HKClassicCurrent focus
238 340-240 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003469845#DW740_RS05270The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235628
Simplified PFAM architecture for HKOC_1235628
PFAM domain coverage: 270 / 565 aa (47.8%)
1 aa565 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[43-138] | HisKA[341-406] | HATPase_c[454-561]
- Domain count: 3
- Matched identifier: HKOC_1235628
- Positioned domains: sCache_like 43-138 ; HisKA 341-406 ; HATPase_c 454-561
Cluster members and taxonomy
Representative gene: GCF_003469845#DW740_RS05270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key