1 GGDEF#1
197-347 aa · 151 aa · 14.4% of protein
Raw token
GGDEF:197:3.54e-21:347:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS04850
Histidine kinase, Hybrid
Blautia obeum · GCF_003469845
ClassHKTypeHybridLength1048 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003469845#DW740_RS04850Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1048 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage452 / 1048 aa (43.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1048 aa
Domain-by-domain annotation4 items
2 HisKA#2
671-737 aa · 67 aa · 6.4% of protein
Raw token
HisKA:671:4.3e-16:737:67:643 HATPase_c#3
784-901 aa · 118 aa · 11.3% of protein
Raw token
HATPase_c:784:2.14e-27:901:118:1094 Response_reg#4
926-1041 aa · 116 aa · 11.1% of protein
Raw token
Response_reg:926:2.87e-30:1041:116:111- Raw architecture: GGDEF:197:3.54e-21:347:157:160#HisKA:671:4.3e-16:737:67:64#HATPase_c:784:2.14e-27:901:118:109#Response_reg:926:2.87e-30:1041:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003469845::NZ_QSKF01000003.1::G00028
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span129659-136987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_04875RefSeq proteinWP_118050254.1
Context group ID
GCF_003469845::NZ_QSKF01000003.1::G00028Context members
DW740_RS04840DW740_RS04845DW740_RS04850
Partner locus tags
DW740_RS04840DW740_RS04845DW740_RS04850
Partner old locus tags
DW740_04865DW740_04870DW740_04875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118050254.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J8P5Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J8P5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS04850Primary locus identifier stored in the genes table.
Old locus tagDW740_04875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000003.1Sequence record reported by the local genomic context database.
Genomic interval133 841-136 987 nt3 147 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span129 659-136 987 ntGCF_003469845::NZ_QSKF01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span129 659-136 987 nt7 329 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 659 nt136 987 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW740_RS04840GCF_003469845#DW740_RS04840
HKHybrid
129 659-131 668 nt · Reverse (-)
DW740_RS04845GCF_003469845#DW740_RS04845
HKHybrid
131 665-133 719 nt · Reverse (-)
DW740_RS04850GCF_003469845#DW740_RS04850
HKHybridCurrent focus
133 841-136 987 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003469845#DW740_RS04850The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0260952
Simplified PFAM architecture for HKOC_0260952
PFAM domain coverage: 451 / 1048 aa (43.0%)
1 aa1048 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[198-349] | HisKA[671-737] | HATPase_c[786-901] | Response_reg[926-1041]
- Domain count: 4
- Matched identifier: HKOC_0260952
- Positioned domains: GGDEF 198-349 ; HisKA 671-737 ; HATPase_c 786-901 ; Response_reg 926-1041
Cluster members and taxonomy
Representative gene: GCF_003469845#DW740_RS04850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key