1 Response_reg#1
4-110 aa · 107 aa · 21.1% of protein
Raw token
Response_reg:4:4.19e-30:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS02465
Response regulator, unclassified
Blautia obeum · GCF_003469845
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003469845#DW740_RS02465Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 507 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-449 aa · 39 aa · 7.7% of protein
Raw token
HTH_AraC:411:0.00000618:449:39:423 HTH_AraC#3
462-499 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:462:0.0000000614:499:38:42- Raw architecture: Response_reg:4:4.19e-30:110:107:111#HTH_AraC:411:0.00000618:449:39:42#HTH_AraC:462:0.0000000614:499:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003469845::NZ_QSKF01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span495640-497163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_02470RefSeq proteinWP_015543123.1
Context group ID
GCF_003469845::NZ_QSKF01000001.1::G00003Context members
DW740_RS02465
Partner locus tags
DW740_RS02465
Partner old locus tags
DW740_02470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015543123.1Primary protein accession used for annex mappings.
UniProt accessionA0A414JC95Primary UniProt accession resolved in the annex database.
UniProt IDA0A414JC95_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS02465Primary locus identifier stored in the genes table.
Old locus tagDW740_02470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000001.1Sequence record reported by the local genomic context database.
Genomic interval495 640-497 163 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span495 640-497 163 ntGCF_003469845::NZ_QSKF01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span495 640-497 163 nt1 524 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
495 640 nt497 163 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW740_RS02465GCF_003469845#DW740_RS02465
RRunclassifiedCurrent focus
495 640-497 163 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS15135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0149969
Simplified PFAM architecture for RROC_0149969
PFAM domain coverage: 189 / 507 aa (37.3%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0149969
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 421-499 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS15135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key