1 HAMP#1
178-245 aa · 68 aa · 14.4% of protein
Raw token
HAMP:178:0.0000000114:245:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS00720
Histidine kinase, Classic
Blautia obeum · GCF_003469845
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS00720Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 473 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-317 aa · 61 aa · 12.9% of protein
Raw token
HisKA:257:0.00000000003:317:61:643 HATPase_c#3
370-472 aa · 103 aa · 21.8% of protein
Raw token
HATPase_c:370:3.03e-26:472:106:109- Raw architecture: HAMP:178:0.0000000114:245:68:69#HisKA:257:0.00000000003:317:61:64#HATPase_c:370:3.03e-26:472:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124952-127035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_00720RefSeq proteinWP_118049900.1
Context group ID
GCF_003469845::NZ_QSKF01000001.1::G00002Context members
DW740_RS00720DW740_RS00725
Partner locus tags
DW740_RS00720DW740_RS00725
Partner old locus tags
DW740_00720DW740_00725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118049900.1Primary protein accession used for annex mappings.
UniProt accessionA0A414JBB7Primary UniProt accession resolved in the annex database.
UniProt IDA0A414JBB7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS00720Primary locus identifier stored in the genes table.
Old locus tagDW740_00720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000001.1Sequence record reported by the local genomic context database.
Genomic interval124 952-126 373 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span124 952-127 035 ntGCF_003469845::NZ_QSKF01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span124 952-127 035 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 952 nt127 035 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS00720GCF_003469845#DW740_RS00720
HKClassicCurrent focus
124 952-126 373 nt · Reverse (-)
DW740_RS00725GCF_003469845#DW740_RS00725
RROmpR
126 370-127 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003469845#DW740_RS00720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1689241
Simplified PFAM architecture for HKOC_1689241
PFAM domain coverage: 163 / 473 aa (34.5%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[257-316] | HATPase_c[370-472]
- Domain count: 2
- Matched identifier: HKOC_1689241
- Positioned domains: HisKA 257-316 ; HATPase_c 370-472
Cluster members and taxonomy
Representative gene: GCF_003469845#DW740_RS00720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key