1 Response_reg#1
5-114 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:5:6.42e-24:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS00600
Response regulator OmpR family
Blautia obeum · GCF_003469845
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS00600Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:145:3.56e-26:217:77:77- Raw architecture: Response_reg:5:6.42e-24:114:112:111#Trans_reg_C:145:3.56e-26:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105804-107725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_00600RefSeq proteinWP_118039749.1
Context group ID
GCF_003469845::NZ_QSKF01000001.1::G00001Context members
DW740_RS00595DW740_RS00600
Partner locus tags
DW740_RS00595DW740_RS00600
Partner old locus tags
DW740_00595DW740_00600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118039749.1Primary protein accession used for annex mappings.
UniProt accessionA0A414EM54Primary UniProt accession resolved in the annex database.
UniProt IDA0A414EM54_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS00600Primary locus identifier stored in the genes table.
Old locus tagDW740_00600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000001.1Sequence record reported by the local genomic context database.
Genomic interval107 066-107 725 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span105 804-107 725 ntGCF_003469845::NZ_QSKF01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span105 804-107 725 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 804 nt107 725 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS00595GCF_003469845#DW740_RS00595
HKClassic
105 804-107 063 nt · Reverse (-)
DW740_RS00600GCF_003469845#DW740_RS00600
RROmpRCurrent focus
107 066-107 725 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS03540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777288
Simplified PFAM architecture for RROC_1777288
PFAM domain coverage: 180 / 219 aa (82.2%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1777288
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS03540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key