1 Response_reg#1
4-115 aa · 112 aa · 94.1% of protein
Raw token
Response_reg:4:1.87e-34:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW856_RS01755
Response regulator, CheY family
Roseburia intestinalis · GCF_003467725
ClassRRTypeCheYLength119 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467725#DW856_RS01755Stable P2CS identifier used across views.
GenomeGCF_003467725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length119 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 119 aa (94.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.87e-34:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467725::NZ_QSHO01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span362966-363325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW856_01755RefSeq proteinWP_006857482.1
Context group ID
GCF_003467725::NZ_QSHO01000001.1::G00006Context members
DW856_RS01755
Partner locus tags
DW856_RS01755
Partner old locus tags
DW856_01755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857482.1Primary protein accession used for annex mappings.
UniProt accessionC7GBU6Primary UniProt accession resolved in the annex database.
UniProt IDC7GBU6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW856_RS01755Primary locus identifier stored in the genes table.
Old locus tagDW856_01755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHO01000001.1Sequence record reported by the local genomic context database.
Genomic interval362 966-363 325 nt360 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span362 966-363 325 ntGCF_003467725::NZ_QSHO01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467725::NZ_QSHO01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span362 966-363 325 nt360 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
362 966 nt363 325 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW856_RS01755GCF_003467725#DW856_RS01755
RRCheYCurrent focus
362 966-363 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS10585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2448376
Simplified PFAM architecture for RROC_2448376
PFAM domain coverage: 112 / 119 aa (94.1%)
1 aa119 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_2448376
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS10585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 166 486 · GCF_003467725
AssemblyASM346772v1 · Scaffoldhaploid
Genome composition4 253 056 bp · 42,0% GCRoseburia intestinalis
Signal transduction countsGenes 106 · HK 47 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key