1 HisKA#1
480-546 aa · 67 aa · 6.7% of protein
Raw token
HisKA:480:6.35e-18:546:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW885_RS03515
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003467405
ClassHKTypeHybridLength995 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467405#DW885_RS03515Stable P2CS identifier used across views.
GenomeGCF_003467405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length995 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage412 / 995 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HATPase_c#2
593-707 aa · 115 aa · 11.6% of protein
Raw token
HATPase_c:593:7.39e-30:707:115:1093 Response_reg#3
730-844 aa · 115 aa · 11.6% of protein
Raw token
Response_reg:730:2.21e-20:844:115:1114 Response_reg#4
873-987 aa · 115 aa · 11.6% of protein
Raw token
Response_reg:873:6.16e-33:987:115:111- Raw architecture: HisKA:480:6.35e-18:546:67:64#HATPase_c:593:7.39e-30:707:115:109#Response_reg:730:2.21e-20:844:115:111#Response_reg:873:6.16e-33:987:115:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467405::NZ_QSGQ01000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span724620-727607Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW885_03520RefSeq proteinWP_118000516.1
Context group ID
GCF_003467405::NZ_QSGQ01000001.1::G00006Context members
DW885_RS03515
Partner locus tags
DW885_RS03515
Partner old locus tags
DW885_03520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118000516.1Primary protein accession used for annex mappings.
UniProt accessionA0A413WAB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A413WAB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW885_RS03515Primary locus identifier stored in the genes table.
Old locus tagDW885_03520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval724 620-727 607 nt2 988 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span724 620-727 607 ntGCF_003467405::NZ_QSGQ01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467405::NZ_QSGQ01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span724 620-727 607 nt2 988 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
724 620 nt727 607 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW885_RS03515GCF_003467405#DW885_RS03515
HKHybridCurrent focus
724 620-727 607 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467405#DW885_RS03515The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0293271
Simplified PFAM architecture for HKOC_0293271
PFAM domain coverage: 413 / 995 aa (41.5%)
1 aa995 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[480-546] | HATPase_c[594-708] | Response_reg[730-843] | Response_reg[873-989]
- Domain count: 4
- Matched identifier: HKOC_0293271
- Positioned domains: HisKA 480-546 ; HATPase_c 594-708 ; Response_reg 730-843 ; Response_reg 873-989
Cluster members and taxonomy
Representative gene: GCF_003467405#DW885_RS03515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003467405
AssemblyASM346740v1 · Scaffoldhaploid
Genome composition3 098 547 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 93 · HK 51 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key