1 Response_reg#1
3-110 aa · 108 aa · 39.7% of protein
Raw token
Response_reg:3:1.54e-17:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW885_RS01555
Response regulator, unclassified
Dorea formicigenerans · GCF_003467405
ClassRRTypeunclassifiedLength272 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467405#DW885_RS01555Stable P2CS identifier used across views.
GenomeGCF_003467405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 272 aa (39.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.54e-17:110:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467405::NZ_QSGQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span311328-313492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW885_01555RefSeq proteinWP_117613261.1
Context group ID
GCF_003467405::NZ_QSGQ01000001.1::G00003Context members
DW885_RS01550DW885_RS01555
Partner locus tags
DW885_RS01550DW885_RS01555
Partner old locus tags
DW885_01550DW885_01555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117613261.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XSS2Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XSS2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW885_RS01555Primary locus identifier stored in the genes table.
Old locus tagDW885_01555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval312 674-313 492 nt819 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span311 328-313 492 ntGCF_003467405::NZ_QSGQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467405::NZ_QSGQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span311 328-313 492 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
311 328 nt313 492 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW885_RS01550GCF_003467405#DW885_RS01550
HKClassic
311 328-312 677 nt · Forward (+)
DW885_RS01555GCF_003467405#DW885_RS01555
RRunclassifiedCurrent focus
312 674-313 492 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS02165Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0610373
Simplified PFAM architecture for RROC_0610373
PFAM domain coverage: 108 / 272 aa (39.7%)
1 aa272 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-110]
- Domain count: 1
- Matched identifier: RROC_0610373
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS02165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003467405
AssemblyASM346740v1 · Scaffoldhaploid
Genome composition3 098 547 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 93 · HK 51 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key