1 Response_reg#1
3-103 aa · 101 aa · 48.8% of protein
Raw token
Response_reg:3:7.18e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW885_RS00940
Response regulator NarL family
Dorea formicigenerans · GCF_003467405
ClassRRTypeNarLLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467405#DW885_RS00940Stable P2CS identifier used across views.
GenomeGCF_003467405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 207 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.6% of protein
Raw token
HTH_LUXR:149:1.21e-20:201:53:58- Raw architecture: Response_reg:3:7.18e-27:103:101:111#HTH_LUXR:149:1.21e-20:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467405::NZ_QSGQ01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202067-203810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW885_00940RefSeq proteinWP_118000160.1
Context group ID
GCF_003467405::NZ_QSGQ01000001.1::G00002Context members
DW885_RS00935DW885_RS00940
Partner locus tags
DW885_RS00935DW885_RS00940
Partner old locus tags
DW885_00935DW885_00940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118000160.1Primary protein accession used for annex mappings.
UniProt accessionA0A413W8T2Primary UniProt accession resolved in the annex database.
UniProt IDA0A413W8T2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW885_RS00940Primary locus identifier stored in the genes table.
Old locus tagDW885_00940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval203 187-203 810 nt624 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 067-203 810 ntGCF_003467405::NZ_QSGQ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467405::NZ_QSGQ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span202 067-203 810 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 067 nt203 810 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW885_RS00935GCF_003467405#DW885_RS00935
HKClassic
202 067-203 185 nt · Forward (+)
DW885_RS00940GCF_003467405#DW885_RS00940
RRNarLCurrent focus
203 187-203 810 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467405#DW885_RS00940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2073389
Simplified PFAM architecture for RROC_2073389
PFAM domain coverage: 155 / 207 aa (74.9%)
1 aa207 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2073389
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_003467405#DW885_RS00940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003467405
AssemblyASM346740v1 · Scaffoldhaploid
Genome composition3 098 547 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 93 · HK 51 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key