1 Response_reg#1
7-116 aa · 110 aa · 39.3% of protein
Raw token
Response_reg:7:2.29e-21:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW885_RS00395
Response regulator, unclassified
Dorea formicigenerans · GCF_003467405
ClassRRTypeunclassifiedLength280 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467405#DW885_RS00395Stable P2CS identifier used across views.
GenomeGCF_003467405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length280 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage230 / 280 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa280 aa
Domain-by-domain annotation2 items
2 YcbB#2
156-275 aa · 120 aa · 42.9% of protein
Raw token
YcbB:156:9.06e-45:275:131:131- Raw architecture: Response_reg:7:2.29e-21:116:110:111#YcbB:156:9.06e-45:275:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467405::NZ_QSGQ01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span86769-87611Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW885_00395RefSeq proteinWP_117613658.1
Context group ID
GCF_003467405::NZ_QSGQ01000001.1::G00001Context members
DW885_RS00395
Partner locus tags
DW885_RS00395
Partner old locus tags
DW885_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117613658.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GRS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GRS7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW885_RS00395Primary locus identifier stored in the genes table.
Old locus tagDW885_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSGQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval86 769-87 611 nt843 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 769-87 611 ntGCF_003467405::NZ_QSGQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467405::NZ_QSGQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSGQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span86 769-87 611 nt843 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 769 nt87 611 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW885_RS00395GCF_003467405#DW885_RS00395
RRunclassifiedCurrent focus
86 769-87 611 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439455#DXB12_RS09945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0597125
Simplified PFAM architecture for RROC_0597125
PFAM domain coverage: 228 / 280 aa (81.4%)
1 aa280 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[7-115] | YcbB[157-275]
- Domain count: 2
- Matched identifier: RROC_0597125
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; YcbB 157-275 ; YcbB 157-275
Cluster members and taxonomy
Representative gene: GCF_003439455#DXB12_RS09945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003467405
AssemblyASM346740v1 · Scaffoldhaploid
Genome composition3 098 547 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 93 · HK 51 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key