1 Response_reg#1
4-106 aa · 103 aa · 45.0% of protein
Raw token
Response_reg:4:2.58e-31:106:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW934_RS08930
Response regulator OmpR family
Blautia obeum · GCF_003466965
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466965#DW934_RS08930Stable P2CS identifier used across views.
GenomeGCF_003466965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 229 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.19e-23:223:78:77- Raw architecture: Response_reg:4:2.58e-31:106:103:111#Trans_reg_C:148:1.19e-23:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466965::NZ_QSFL01000006.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96000-97714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW934_08935RefSeq proteinWP_118049240.1
Context group ID
GCF_003466965::NZ_QSFL01000006.1::G00040Context members
DW934_RS08930DW934_RS08935
Partner locus tags
DW934_RS08930DW934_RS08935
Partner old locus tags
DW934_08935DW934_08940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118049240.1Primary protein accession used for annex mappings.
UniProt accessionA0A415N2M5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415N2M5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW934_RS08930Primary locus identifier stored in the genes table.
Old locus tagDW934_08935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSFL01000006.1Sequence record reported by the local genomic context database.
Genomic interval96 000-96 689 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 000-97 714 ntGCF_003466965::NZ_QSFL01000006.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466965::NZ_QSFL01000006.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSFL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span96 000-97 714 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 000 nt97 714 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW934_RS08930GCF_003466965#DW934_RS08930
RROmpRCurrent focus
96 000-96 689 nt · Forward (+)
DW934_RS08935GCF_003466965#DW934_RS08935
HKClassic
96 686-97 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS08930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1261102
Simplified PFAM architecture for RROC_1261102
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1261102
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS08930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003466965
AssemblyASM346696v1 · Scaffoldhaploid
Genome composition3 690 080 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 95 · HK 49 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key