1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:9.14e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW934_RS00725
Response regulator, unclassified
Blautia obeum · GCF_003466965
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466965#DW934_RS00725Stable P2CS identifier used across views.
GenomeGCF_003466965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 531 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.0000000004:477:42:423 HTH_AraC#3
492-525 aa · 34 aa · 6.4% of protein
Raw token
HTH_AraC:492:0.000000184:525:34:42- Raw architecture: Response_reg:4:9.14e-28:117:114:111#HTH_AraC:436:0.0000000004:477:42:42#HTH_AraC:492:0.000000184:525:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466965::NZ_QSFL01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159201-162355Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW934_00730RefSeq proteinWP_118048575.1
Context group ID
GCF_003466965::NZ_QSFL01000001.1::G00004Context members
DW934_RS00720DW934_RS00725
Partner locus tags
DW934_RS00720DW934_RS00725
Partner old locus tags
DW934_00725DW934_00730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118048575.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW934_RS00725Primary locus identifier stored in the genes table.
Old locus tagDW934_00730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSFL01000001.1Sequence record reported by the local genomic context database.
Genomic interval160 760-162 355 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 201-162 355 ntGCF_003466965::NZ_QSFL01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466965::NZ_QSFL01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSFL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span159 201-162 355 nt3 155 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 201 nt162 355 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW934_RS00720GCF_003466965#DW934_RS00720
HKClassic
159 201-160 718 nt · Forward (+)
DW934_RS00725GCF_003466965#DW934_RS00725
RRunclassifiedCurrent focus
160 760-162 355 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS00725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110032
Simplified PFAM architecture for RROC_0110032
PFAM domain coverage: 281 / 531 aa (52.9%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[203-294] | HTH_18[453-527]
- Domain count: 3
- Matched identifier: RROC_0110032
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; GGDEF_2 203-294 ; GGDEF_2 203-294 ; HTH_18 453-527 ; HTH_18 453-527
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003466965
AssemblyASM346696v1 · Scaffoldhaploid
Genome composition3 690 080 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 95 · HK 49 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key