1 HAMP#1
261-328 aa · 68 aa · 12.5% of protein
Raw token
HAMP:261:0.00000000258:328:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD79_RS00125
Histidine kinase, Classic
Hungatella hathewayi · GCF_003466285
ClassHKTypeClassicLength546 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466285#DXD79_RS00125Stable P2CS identifier used across views.
GenomeGCF_003466285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length546 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 546 aa (44.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa546 aa
Domain-by-domain annotation3 items
2 His_kinase#2
343-422 aa · 80 aa · 14.7% of protein
Raw token
His_kinase:343:4.8e-22:422:80:803 HATPase_c#3
441-536 aa · 96 aa · 17.6% of protein
Raw token
HATPase_c:441:0.0000102:536:108:109- Raw architecture: HAMP:261:0.00000000258:328:68:69#His_kinase:343:4.8e-22:422:80:80#HATPase_c:441:0.0000102:536:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466285::NZ_QSON01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29326-32491Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD79_00125RefSeq proteinWP_117630476.1
Context group ID
GCF_003466285::NZ_QSON01000001.1::G00001Context members
DXD79_RS00125DXD79_RS00130
Partner locus tags
DXD79_RS00125DXD79_RS00130
Partner old locus tags
DXD79_00125DXD79_00130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630476.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PDE8Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PDE8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD79_RS00125Primary locus identifier stored in the genes table.
Old locus tagDXD79_00125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSON01000001.1Sequence record reported by the local genomic context database.
Genomic interval29 326-30 966 nt1 641 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 326-32 491 ntGCF_003466285::NZ_QSON01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466285::NZ_QSON01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSON01000001.1All displayed genes belong to this local TCS context.
Neighborhood span29 326-32 491 nt3 166 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 326 nt32 491 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD79_RS00125GCF_003466285#DXD79_RS00125
HKClassicCurrent focus
29 326-30 966 nt · Reverse (-)
DXD79_RS00130GCF_003466285#DXD79_RS00130
RRunclassified
30 956-32 491 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03710Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1304454
Simplified PFAM architecture for HKOC_1304454
PFAM domain coverage: 78 / 546 aa (14.3%)
1 aa546 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[344-421]
- Domain count: 1
- Matched identifier: HKOC_1304454
- Positioned domains: His_kinase 344-421
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003466285
AssemblyASM346628v1 · Scaffoldhaploid
Genome composition7 637 491 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 297 · HK 148 · RR 146CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key