1 SBP_bac_3#1
73-274 aa · 202 aa · 21.0% of protein
Raw token
SBP_bac_3:73:9.29e-31:274:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS14450
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003466265
ClassHKTypeHybridLength963 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003466265#DXD82_RS14450Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length963 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage704 / 963 aa (73.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa963 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
308-506 aa · 199 aa · 20.7% of protein
Raw token
SBP_bac_3:308:0.000000000914:506:216:2243 HisKA#3
587-652 aa · 66 aa · 6.9% of protein
Raw token
HisKA:587:2.87e-19:652:66:644 HATPase_c#4
699-817 aa · 119 aa · 12.4% of protein
Raw token
HATPase_c:699:9.1e-28:817:120:1095 Response_reg#5
840-957 aa · 118 aa · 12.3% of protein
Raw token
Response_reg:840:9.76e-30:957:118:111- Raw architecture: SBP_bac_3:73:9.29e-31:274:212:224#SBP_bac_3:308:0.000000000914:506:216:224#HisKA:587:2.87e-19:652:66:64#HATPase_c:699:9.1e-28:817:120:109#Response_reg:840:9.76e-30:957:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003466265::NZ_QSOK01000030.1::G00033
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span719-9120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_14445RefSeq proteinWP_117992301.1
Context group ID
GCF_003466265::NZ_QSOK01000030.1::G00033Context members
DXD82_RS14450DXD82_RS14460DXD82_RS14465
Partner locus tags
DXD82_RS14450DXD82_RS14460DXD82_RS14465
Partner old locus tags
DXD82_14445DXD82_14455DXD82_14460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117992301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS14450Primary locus identifier stored in the genes table.
Old locus tagDXD82_14445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000030.1Sequence record reported by the local genomic context database.
Genomic interval719-3 610 nt2 892 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span719-9 120 ntGCF_003466265::NZ_QSOK01000030.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000030.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000030.1All displayed genes belong to this local TCS context.
Neighborhood span719-9 120 nt8 402 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
719 nt9 120 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD82_RS14450GCF_003466265#DXD82_RS14450
HKHybridCurrent focus
719-3 610 nt · Reverse (-)
DXD82_RS14460GCF_003466265#DXD82_RS14460
HKHybrid
4 013-6 805 nt · Reverse (-)
DXD82_RS14465GCF_003466265#DXD82_RS14465
HKHybrid
6 955-9 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466265#DXD82_RS14450The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0316010
Simplified PFAM architecture for HKOC_0316010
PFAM domain coverage: 698 / 963 aa (72.5%)
1 aa963 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[70-262] | SBP_bac_3[303-506] | HisKA[587-652] | HATPase_c[700-816] | Response_reg[840-957]
- Domain count: 5
- Matched identifier: HKOC_0316010
- Positioned domains: SBP_bac_3 70-262 ; SBP_bac_3 303-506 ; HisKA 587-652 ; HATPase_c 700-816 ; Response_reg 840-957
Cluster members and taxonomy
Representative gene: GCF_003466265#DXD82_RS14450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key