1 SBP_bac_3#1
27-243 aa · 217 aa · 23.2% of protein
Raw token
SBP_bac_3:27:7.32e-31:243:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS00170
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003466265
ClassHKTypeHybridLength935 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466265#DXD82_RS00170Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length935 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage723 / 935 aa (77.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa935 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
265-469 aa · 205 aa · 21.9% of protein
Raw token
SBP_bac_3:265:0.000000000000203:469:220:2243 HisKA#3
558-622 aa · 65 aa · 7.0% of protein
Raw token
HisKA:558:1.54e-18:622:65:644 HATPase_c#4
668-786 aa · 119 aa · 12.7% of protein
Raw token
HATPase_c:668:5.9e-28:786:119:1095 Response_reg#5
812-928 aa · 117 aa · 12.5% of protein
Raw token
Response_reg:812:1.5e-29:928:117:111- Raw architecture: SBP_bac_3:27:7.32e-31:243:227:224#SBP_bac_3:265:0.000000000000203:469:220:224#HisKA:558:1.54e-18:622:65:64#HATPase_c:668:5.9e-28:786:119:109#Response_reg:812:1.5e-29:928:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466265::NZ_QSOK01000001.1::G00001
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span37709-42651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_00170RefSeq proteinWP_243007380.1
Context group ID
GCF_003466265::NZ_QSOK01000001.1::G00001Context members
DXD82_RS00170DXD82_RS00175
Partner locus tags
DXD82_RS00170DXD82_RS00175
Partner old locus tags
DXD82_00170DXD82_00175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243007380.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS00170Primary locus identifier stored in the genes table.
Old locus tagDXD82_00170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000001.1Sequence record reported by the local genomic context database.
Genomic interval37 709-40 516 nt2 808 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 709-42 651 ntGCF_003466265::NZ_QSOK01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span37 709-42 651 nt4 943 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 709 nt42 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD82_RS00170GCF_003466265#DXD82_RS00170
HKHybridCurrent focus
37 709-40 516 nt · Reverse (-)
DXD82_RS00175GCF_003466265#DXD82_RS00175
HKHybrid
40 633-42 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466265#DXD82_RS00170The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0346199
Simplified PFAM architecture for HKOC_0346199
PFAM domain coverage: 514 / 935 aa (55.0%)
1 aa935 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[28-243] | HisKA[557-622] | HATPase_c[669-784] | Response_reg[812-927]
- Domain count: 4
- Matched identifier: HKOC_0346199
- Positioned domains: SBP_bac_3 28-243 ; HisKA 557-622 ; HATPase_c 669-784 ; Response_reg 812-927
Cluster members and taxonomy
Representative gene: GCF_003466265#DXD82_RS00170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key