1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:8.35e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS02815
Response regulator OmpR family
Anaerobutyricum hallii · GCF_003466185
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466185#DXD91_RS02815Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:5.14e-31:222:77:77- Raw architecture: Response_reg:4:8.35e-22:113:111:111#Trans_reg_C:147:5.14e-31:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466185::NZ_QSOE01000010.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span36494-37168Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_02810RefSeq proteinWP_117982044.1
Context group ID
GCF_003466185::NZ_QSOE01000010.1::G00001Context members
DXD91_RS02815
Partner locus tags
DXD91_RS02815
Partner old locus tags
DXD91_02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982044.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NUC9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NUC9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS02815Primary locus identifier stored in the genes table.
Old locus tagDXD91_02810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000010.1Sequence record reported by the local genomic context database.
Genomic interval36 494-37 168 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 494-37 168 ntGCF_003466185::NZ_QSOE01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000010.1All displayed genes belong to this local TCS context.
Neighborhood span36 494-37 168 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 494 nt37 168 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD91_RS02815GCF_003466185#DXD91_RS02815
RROmpRCurrent focus
36 494-37 168 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS02815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543388
Simplified PFAM architecture for RROC_1543388
PFAM domain coverage: 186 / 224 aa (83.0%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1543388
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS02815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key