1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.0000000664:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD91_RS01690
Histidine kinase, Classic
Anaerobutyricum hallii · GCF_003466185
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466185#DXD91_RS01690Stable P2CS identifier used across views.
GenomeGCF_003466185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 392 aa (60.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.0000016:241:63:643 HATPase_c#3
287-392 aa · 106 aa · 27.0% of protein
Raw token
HATPase_c:287:2.02e-20:392:108:109- Raw architecture: HAMP:94:0.0000000664:161:68:69#HisKA:179:0.0000016:241:63:64#HATPase_c:287:2.02e-20:392:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466185::NZ_QSOE01000006.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5505-7345Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD91_01690RefSeq proteinWP_117981936.1
Context group ID
GCF_003466185::NZ_QSOE01000006.1::G00043Context members
DXD91_RS01685DXD91_RS01690
Partner locus tags
DXD91_RS01685DXD91_RS01690
Partner old locus tags
DXD91_01685DXD91_01690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117981936.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NV60Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NV60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD91_RS01690Primary locus identifier stored in the genes table.
Old locus tagDXD91_01690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOE01000006.1Sequence record reported by the local genomic context database.
Genomic interval6 167-7 345 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 505-7 345 ntGCF_003466185::NZ_QSOE01000006.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466185::NZ_QSOE01000006.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOE01000006.1All displayed genes belong to this local TCS context.
Neighborhood span5 505-7 345 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 505 nt7 345 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD91_RS01685GCF_003466185#DXD91_RS01685
RROmpR
5 505-6 179 nt · Forward (+)
DXD91_RS01690GCF_003466185#DXD91_RS01690
HKClassicCurrent focus
6 167-7 345 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS01690The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512814
Simplified PFAM architecture for HKOC_2512814
PFAM domain coverage: 213 / 392 aa (54.3%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-159] | HisKA[179-241] | HATPase_c[287-390]
- Domain count: 3
- Matched identifier: HKOC_2512814
- Positioned domains: HAMP 114-159 ; HisKA 179-241 ; HATPase_c 287-390
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS01690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 488 · GCF_003466185
AssemblyASM346618v1 · Contighaploid
Genome composition3 602 314 bp · 38,5% GCAnaerobutyricum hallii
Signal transduction countsGenes 73 · HK 33 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key