1 Response_reg#1
10-118 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:10:3.16e-32:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS11875
Response regulator OmpR family
[Clostridium] symbiosum · GCF_003463485
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463485#DXA34_RS11875Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-235 aa · 78 aa · 33.1% of protein
Raw token
Trans_reg_C:158:2.65e-29:235:78:77- Raw architecture: Response_reg:10:3.16e-32:118:111:111#Trans_reg_C:158:2.65e-29:235:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463485::NZ_QSDB01000029.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43787-45810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_11875RefSeq proteinWP_003508008.1
Context group ID
GCF_003463485::NZ_QSDB01000029.1::G00031Context members
DXA34_RS11875DXA34_RS11880
Partner locus tags
DXA34_RS11875DXA34_RS11880
Partner old locus tags
DXA34_11875DXA34_11880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003508008.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TT81Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TT81_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS11875Primary locus identifier stored in the genes table.
Old locus tagDXA34_11875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000029.1Sequence record reported by the local genomic context database.
Genomic interval43 787-44 497 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 787-45 810 ntGCF_003463485::NZ_QSDB01000029.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000029.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000029.1All displayed genes belong to this local TCS context.
Neighborhood span43 787-45 810 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 787 nt45 810 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA34_RS11875GCF_003463485#DXA34_RS11875
RROmpRCurrent focus
43 787-44 497 nt · Forward (+)
DXA34_RS11880GCF_003463485#DXA34_RS11880
HKClassic
44 497-45 810 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS09020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988718
Simplified PFAM architecture for RROC_0988718
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-118] | Trans_reg_C[159-235]
- Domain count: 2
- Matched identifier: RROC_0988718
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; Trans_reg_C 159-235 ; Trans_reg_C 159-235
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS09020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key