1 HisKA#1
40-105 aa · 66 aa · 24.9% of protein
Raw token
HisKA:40:0.000000347:105:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS10555
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS10555Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 265 aa (67.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
151-262 aa · 112 aa · 42.3% of protein
Raw token
HATPase_c:151:4.4e-25:262:113:109- Raw architecture: HisKA:40:0.000000347:105:66:64#HATPase_c:151:4.4e-25:262:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000024.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44429-45226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_10560RefSeq proteinWP_243004067.1
Context group ID
GCF_003463485::NZ_QSDB01000024.1::G00027Context members
DXA34_RS10555
Partner locus tags
DXA34_RS10555
Partner old locus tags
DXA34_10560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243004067.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS10555Primary locus identifier stored in the genes table.
Old locus tagDXA34_10560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000024.1Sequence record reported by the local genomic context database.
Genomic interval44 429-45 226 nt798 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 429-45 226 ntGCF_003463485::NZ_QSDB01000024.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000024.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000024.1All displayed genes belong to this local TCS context.
Neighborhood span44 429-45 226 nt798 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 429 nt45 226 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS10555GCF_003463485#DXA34_RS10555
HKClassicCurrent focus
44 429-45 226 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023015555#K5I21_RS04470Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2305825
Simplified PFAM architecture for HKOC_2305825
PFAM domain coverage: 226 / 416 aa (54.3%)
1 aa416 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-165] | HisKA[193-256] | HATPase_c[303-412]
- Domain count: 3
- Matched identifier: HKOC_2305825
- Positioned domains: HAMP 114-165 ; HisKA 193-256 ; HATPase_c 303-412
Cluster members and taxonomy
Representative gene: GCF_023015555#K5I21_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key