1 HisKA#1
341-406 aa · 66 aa · 9.0% of protein
Raw token
HisKA:341:4.61e-17:406:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS09880
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeHybridLength730 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS09880Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length730 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 730 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa730 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-571 aa · 118 aa · 16.2% of protein
Raw token
HATPase_c:454:7.2e-32:571:118:1093 Response_reg#3
605-721 aa · 117 aa · 16.0% of protein
Raw token
Response_reg:605:2.63e-28:721:117:111- Raw architecture: HisKA:341:4.61e-17:406:66:64#HATPase_c:454:7.2e-32:571:118:109#Response_reg:605:2.63e-28:721:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000022.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13963-16155Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_09885RefSeq proteinWP_242827559.1
Context group ID
GCF_003463485::NZ_QSDB01000022.1::G00024Context members
DXA34_RS09880
Partner locus tags
DXA34_RS09880
Partner old locus tags
DXA34_09885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242827559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS09880Primary locus identifier stored in the genes table.
Old locus tagDXA34_09885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000022.1Sequence record reported by the local genomic context database.
Genomic interval13 963-16 155 nt2 193 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 963-16 155 ntGCF_003463485::NZ_QSDB01000022.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000022.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000022.1All displayed genes belong to this local TCS context.
Neighborhood span13 963-16 155 nt2 193 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 963 nt16 155 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS09880GCF_003463485#DXA34_RS09880
HKHybridCurrent focus
13 963-16 155 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS01810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0712148
Simplified PFAM architecture for HKOC_0712148
PFAM domain coverage: 300 / 730 aa (41.1%)
1 aa730 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-406] | HATPase_c[454-571] | Response_reg[605-720]
- Domain count: 3
- Matched identifier: HKOC_0712148
- Positioned domains: HisKA 341-406 ; HATPase_c 454-571 ; Response_reg 605-720
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS01810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key