1 HisKA#1
235-301 aa · 67 aa · 9.0% of protein
Raw token
HisKA:235:2.27e-17:301:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS08485
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeHybridLength748 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS08485Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length748 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 748 aa (55.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa748 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
348-466 aa · 119 aa · 15.9% of protein
Raw token
HATPase_c:348:2.09e-30:466:119:1093 Response_reg#3
484-596 aa · 113 aa · 15.1% of protein
Raw token
Response_reg:484:1.34e-21:596:115:1114 Response_reg#4
625-743 aa · 119 aa · 15.9% of protein
Raw token
Response_reg:625:6.18e-29:743:119:111- Raw architecture: HisKA:235:2.27e-17:301:67:64#HATPase_c:348:2.09e-30:466:119:109#Response_reg:484:1.34e-21:596:115:111#Response_reg:625:6.18e-29:743:119:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000017.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46686-48932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_08485RefSeq proteinWP_118007916.1
Context group ID
GCF_003463485::NZ_QSDB01000017.1::G00020Context members
DXA34_RS08485
Partner locus tags
DXA34_RS08485
Partner old locus tags
DXA34_08485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118007916.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS08485Primary locus identifier stored in the genes table.
Old locus tagDXA34_08485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000017.1Sequence record reported by the local genomic context database.
Genomic interval46 686-48 932 nt2 247 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 686-48 932 ntGCF_003463485::NZ_QSDB01000017.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000017.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000017.1All displayed genes belong to this local TCS context.
Neighborhood span46 686-48 932 nt2 247 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 686 nt48 932 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS08485GCF_003463485#DXA34_RS08485
HKHybridCurrent focus
46 686-48 932 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS08485The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0673183
Simplified PFAM architecture for HKOC_0673183
PFAM domain coverage: 416 / 748 aa (55.6%)
1 aa748 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[235-301] | HATPase_c[349-465] | Response_reg[484-597] | Response_reg[625-742]
- Domain count: 4
- Matched identifier: HKOC_0673183
- Positioned domains: HisKA 235-301 ; HATPase_c 349-465 ; Response_reg 484-597 ; Response_reg 625-742
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS08485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key