1 Response_reg#1
5-116 aa · 112 aa · 94.1% of protein
Raw token
Response_reg:5:3.5e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS08295
Response regulator, CheY family
[Clostridium] symbiosum · GCF_003463485
ClassRRTypeCheYLength119 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS08295Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length119 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 119 aa (94.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa119 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:3.5e-30:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000016.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span64337-64696Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_08295RefSeq proteinWP_024739507.1
Context group ID
GCF_003463485::NZ_QSDB01000016.1::G00019Context members
DXA34_RS08295
Partner locus tags
DXA34_RS08295
Partner old locus tags
DXA34_08295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_024739507.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5F1U1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5F1U1_CLOSYDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS08295Primary locus identifier stored in the genes table.
Old locus tagDXA34_08295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000016.1Sequence record reported by the local genomic context database.
Genomic interval64 337-64 696 nt360 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 337-64 696 ntGCF_003463485::NZ_QSDB01000016.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000016.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000016.1All displayed genes belong to this local TCS context.
Neighborhood span64 337-64 696 nt360 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 337 nt64 696 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS08295GCF_003463485#DXA34_RS08295
RRCheYCurrent focus
64 337-64 696 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS08295The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2450561
Simplified PFAM architecture for RROC_2450561
PFAM domain coverage: 111 / 119 aa (93.3%)
1 aa119 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2450561
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS08295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key