1 H-kinase_dim#1
3-55 aa · 53 aa · 13.7% of protein
Raw token
H-kinase_dim:3:0.00000056:55:61:67P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS08250
Histidine kinase, CheA
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeCheALength388 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS08250Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
H-kinase_dimHATPase_cCheW
Protein length388 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage321 / 388 aa (82.7%)Merged over positioned domains only.
Domain description1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa388 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
103-241 aa · 139 aa · 35.8% of protein
Raw token
HATPase_c:103:7.28e-21:241:139:1093 CheW#3
253-381 aa · 129 aa · 33.2% of protein
Raw token
CheW:253:2.37e-19:381:133:138- Raw architecture: H-kinase_dim:3:0.00000056:55:61:67#HATPase_c:103:7.28e-21:241:139:109#CheW:253:2.37e-19:381:133:138
- Domain description: 1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000016.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57400-58566Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_08250RefSeq proteinWP_243004054.1
Context group ID
GCF_003463485::NZ_QSDB01000016.1::G00017Context members
DXA34_RS08250
Partner locus tags
DXA34_RS08250
Partner old locus tags
DXA34_08250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_243004054.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3B525Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3B525_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS08250Primary locus identifier stored in the genes table.
Old locus tagDXA34_08250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000016.1Sequence record reported by the local genomic context database.
Genomic interval57 400-58 566 nt1 167 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 400-58 566 ntGCF_003463485::NZ_QSDB01000016.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000016.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000016.1All displayed genes belong to this local TCS context.
Neighborhood span57 400-58 566 nt1 167 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 400 nt58 566 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS08250GCF_003463485#DXA34_RS08250
HKCheACurrent focus
57 400-58 566 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS08250The current gene is the representative for this cluster.
PFAM architectureHATPase_c + CheW2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2544269
Simplified PFAM architecture for HKOC_2544269
PFAM domain coverage: 266 / 388 aa (68.6%)
1 aa388 aa
HATPase_cCheW
- Simplified architecture: HATPase_c + CheW
- Raw architecture: HATPase_c[105-241] | CheW[252-380]
- Domain count: 2
- Matched identifier: HKOC_2544269
- Positioned domains: HATPase_c 105-241 ; CheW 252-380
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS08250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key