1 HisKA#1
254-319 aa · 66 aa · 13.8% of protein
Raw token
HisKA:254:0.00000000000146:319:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS07825
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS07825Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 480 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
367-476 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:367:2.92e-32:476:110:109- Raw architecture: HisKA:254:0.00000000000146:319:66:64#HATPase_c:367:2.92e-32:476:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000015.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span33481-34923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_07825RefSeq proteinWP_021640605.1
Context group ID
GCF_003463485::NZ_QSDB01000015.1::G00013Context members
DXA34_RS07825
Partner locus tags
DXA34_RS07825
Partner old locus tags
DXA34_07825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021640605.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TV01Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TV01_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS07825Primary locus identifier stored in the genes table.
Old locus tagDXA34_07825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000015.1Sequence record reported by the local genomic context database.
Genomic interval33 481-34 923 nt1 443 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 481-34 923 ntGCF_003463485::NZ_QSDB01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000015.1All displayed genes belong to this local TCS context.
Neighborhood span33 481-34 923 nt1 443 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 481 nt34 923 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS07825GCF_003463485#DXA34_RS07825
HKClassicCurrent focus
33 481-34 923 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466485#CLOSYM_RS01005Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1619553
Simplified PFAM architecture for HKOC_1619553
PFAM domain coverage: 176 / 480 aa (36.7%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[254-319] | HATPase_c[367-476]
- Domain count: 2
- Matched identifier: HKOC_1619553
- Positioned domains: HisKA 254-319 ; HATPase_c 367-476
Cluster members and taxonomy
Representative gene: GCF_000466485#CLOSYM_RS01005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key