1 KdpD#1
24-232 aa · 209 aa · 23.4% of protein
Raw token
KdpD:24:1.45e-137:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS07540
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeClassicLength895 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463485#DXA34_RS07540Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length895 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 895 aa (43.6%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa895 aa
Domain-by-domain annotation3 items
2 HisKA#2
667-734 aa · 68 aa · 7.6% of protein
Raw token
HisKA:667:0.000000000000705:734:68:643 HATPase_c#3
778-890 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:778:6.42e-30:890:113:109- Raw architecture: KdpD:24:1.45e-137:232:209:210#HisKA:667:0.000000000000705:734:68:64#HATPase_c:778:6.42e-30:890:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463485::NZ_QSDB01000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50839-54217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_07540RefSeq proteinWP_118020576.1
Context group ID
GCF_003463485::NZ_QSDB01000014.1::G00011Context members
DXA34_RS07535DXA34_RS07540
Partner locus tags
DXA34_RS07535DXA34_RS07540
Partner old locus tags
DXA34_07535DXA34_07540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118020576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS07540Primary locus identifier stored in the genes table.
Old locus tagDXA34_07540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000014.1Sequence record reported by the local genomic context database.
Genomic interval51 530-54 217 nt2 688 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 839-54 217 ntGCF_003463485::NZ_QSDB01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000014.1All displayed genes belong to this local TCS context.
Neighborhood span50 839-54 217 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 839 nt54 217 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA34_RS07535GCF_003463485#DXA34_RS07535
RROmpR
50 839-51 537 nt · Reverse (-)
DXA34_RS07540GCF_003463485#DXA34_RS07540
HKClassicCurrent focus
51 530-54 217 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS07540The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0416625
Simplified PFAM architecture for HKOC_0416625
PFAM domain coverage: 494 / 895 aa (55.2%)
1 aa895 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[399-504] | HisKA[667-734] | HATPase_c[779-889]
- Domain count: 4
- Matched identifier: HKOC_0416625
- Positioned domains: KdpD 24-232 ; DUF4118 399-504 ; HisKA 667-734 ; HATPase_c 779-889
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS07540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key