1 PAS_3#1
512-570 aa · 59 aa · 4.5% of protein
Raw token
PAS_3:512:0.0000308:570:63:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS06155
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeHybridLength1318 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS06155Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFHisKAHATPase_cResponse_reg
Protein length1318 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage513 / 1318 aa (38.9%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1318 aa
Domain-by-domain annotation5 items
2 GGDEF#2
587-733 aa · 147 aa · 11.2% of protein
Raw token
GGDEF:587:0.0000000000103:733:159:1603 HisKA#3
939-1005 aa · 67 aa · 5.1% of protein
Raw token
HisKA:939:8.02e-17:1005:67:644 HATPase_c#4
1051-1172 aa · 122 aa · 9.3% of protein
Raw token
HATPase_c:1051:1.38e-28:1172:122:1095 Response_reg#5
1198-1315 aa · 118 aa · 9.0% of protein
Raw token
Response_reg:1198:2.28e-31:1315:118:111- Raw architecture: PAS_3:512:0.0000308:570:63:89#GGDEF:587:0.0000000000103:733:159:160#HisKA:939:8.02e-17:1005:67:64#HATPase_c:1051:1.38e-28:1172:122:109#Response_reg:1198:2.28e-31:1315:118:111
- Domain description: 1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000011.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14476-18432Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_06155RefSeq proteinWP_118020523.1
Context group ID
GCF_003463485::NZ_QSDB01000011.1::G00004Context members
DXA34_RS06155
Partner locus tags
DXA34_RS06155
Partner old locus tags
DXA34_06155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118020523.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS06155Primary locus identifier stored in the genes table.
Old locus tagDXA34_06155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000011.1Sequence record reported by the local genomic context database.
Genomic interval14 476-18 432 nt3 957 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 476-18 432 ntGCF_003463485::NZ_QSDB01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000011.1All displayed genes belong to this local TCS context.
Neighborhood span14 476-18 432 nt3 957 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 476 nt18 432 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS06155GCF_003463485#DXA34_RS06155
HKHybridCurrent focus
14 476-18 432 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS06155The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0116578
Simplified PFAM architecture for HKOC_0116578
PFAM domain coverage: 459 / 1318 aa (34.8%)
1 aa1318 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[588-741] | HisKA[940-1005] | HATPase_c[1052-1172] | Response_reg[1198-1315]
- Domain count: 4
- Matched identifier: HKOC_0116578
- Positioned domains: GGDEF 588-741 ; HisKA 940-1005 ; HATPase_c 1052-1172 ; Response_reg 1198-1315
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS06155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key