1 GGDEF#1
305-457 aa · 153 aa · 14.8% of protein
Raw token
GGDEF:305:5.03e-21:457:160:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS04485
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeHybridLength1032 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS04485Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1032 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage454 / 1032 aa (44.0%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1032 aa
Domain-by-domain annotation4 items
2 HisKA#2
651-717 aa · 67 aa · 6.5% of protein
Raw token
HisKA:651:2.05e-17:717:67:643 HATPase_c#3
764-880 aa · 117 aa · 11.3% of protein
Raw token
HATPase_c:764:2.87e-32:880:117:1094 Response_reg#4
906-1022 aa · 117 aa · 11.3% of protein
Raw token
Response_reg:906:1.08e-31:1022:117:111- Raw architecture: GGDEF:305:5.03e-21:457:160:160#HisKA:651:2.05e-17:717:67:64#HATPase_c:764:2.87e-32:880:117:109#Response_reg:906:1.08e-31:1022:117:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000007.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21726-24824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_04485RefSeq proteinWP_118020477.1
Context group ID
GCF_003463485::NZ_QSDB01000007.1::G00061Context members
DXA34_RS04485
Partner locus tags
DXA34_RS04485
Partner old locus tags
DXA34_04485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118020477.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS04485Primary locus identifier stored in the genes table.
Old locus tagDXA34_04485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000007.1Sequence record reported by the local genomic context database.
Genomic interval21 726-24 824 nt3 099 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 726-24 824 ntGCF_003463485::NZ_QSDB01000007.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000007.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000007.1All displayed genes belong to this local TCS context.
Neighborhood span21 726-24 824 nt3 099 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 726 nt24 824 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS04485GCF_003463485#DXA34_RS04485
HKHybridCurrent focus
21 726-24 824 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS04485The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0269904
Simplified PFAM architecture for HKOC_0269904
PFAM domain coverage: 449 / 1032 aa (43.5%)
1 aa1032 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[305-455] | HisKA[651-717] | HATPase_c[765-879] | Response_reg[906-1021]
- Domain count: 4
- Matched identifier: HKOC_0269904
- Positioned domains: GGDEF 305-455 ; HisKA 651-717 ; HATPase_c 765-879 ; Response_reg 906-1021
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS04485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key