1 Response_reg#1
6-110 aa · 105 aa · 19.1% of protein
Raw token
Response_reg:6:1.06e-29:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS04305
Response regulator, RpfG family
[Clostridium] symbiosum · GCF_003463485
ClassRRTypeRpfGLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003463485#DXA34_RS04305Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage356 / 550 aa (64.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HD#2
193-300 aa · 108 aa · 19.6% of protein
Raw token
HD:193:0.0000000000000722:300:108:1103 GGDEF#3
390-532 aa · 143 aa · 26.0% of protein
Raw token
GGDEF:390:2.58e-39:532:156:160- Raw architecture: Response_reg:6:1.06e-29:110:106:111#HD:193:0.0000000000000722:300:108:110#GGDEF:390:2.58e-39:532:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003463485::NZ_QSDB01000006.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102074-106671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_04305RefSeq proteinWP_003501149.1
Context group ID
GCF_003463485::NZ_QSDB01000006.1::G00055Context members
DXA34_RS04295DXA34_RS04305
Partner locus tags
DXA34_RS04295DXA34_RS04305
Partner old locus tags
DXA34_04295DXA34_04305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003501149.1Primary protein accession used for annex mappings.
UniProt accessionE7GNT0Primary UniProt accession resolved in the annex database.
UniProt IDE7GNT0_CLOS6Display identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS04305Primary locus identifier stored in the genes table.
Old locus tagDXA34_04305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000006.1Sequence record reported by the local genomic context database.
Genomic interval105 019-106 671 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 074-106 671 ntGCF_003463485::NZ_QSDB01000006.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000006.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000006.1All displayed genes belong to this local TCS context.
Neighborhood span102 074-106 671 nt4 598 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 074 nt106 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA34_RS04295GCF_003463485#DXA34_RS04295
HKHybrid
102 074-104 632 nt · Reverse (-)
DXA34_RS04305GCF_003463485#DXA34_RS04305
RRRpfGCurrent focus
105 019-106 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS13160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073604
Simplified PFAM architecture for RROC_0073604
PFAM domain coverage: 376 / 550 aa (68.4%)
1 aa550 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-112] | HD_5[199-323] | GGDEF[390-533]
- Domain count: 3
- Matched identifier: RROC_0073604
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; HD_5 199-323 ; HD_5 199-323 ; GGDEF 390-533 ; GGDEF 390-533
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS13160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key