1 PAS_3#1
165-243 aa · 79 aa · 6.0% of protein
Raw token
PAS_3:165:0.0000000000732:243:84:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS04030
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_003463485
ClassHKTypeHybridLength1312 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS04030Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1312 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage616 / 1312 aa (47.0%)Merged over positioned domains only.
Domain description4 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1312 aa
Domain-by-domain annotation7 items
2 PAS_3#2
302-390 aa · 89 aa · 6.8% of protein
Raw token
PAS_3:302:0.0000000000000122:390:90:893 PAS_3#3
448-519 aa · 72 aa · 5.5% of protein
Raw token
PAS_3:448:0.00000225:519:74:894 PAS_3#4
559-631 aa · 73 aa · 5.6% of protein
Raw token
PAS_3:559:0.0000000527:631:74:895 HisKA#5
936-1002 aa · 67 aa · 5.1% of protein
Raw token
HisKA:936:3.62e-19:1002:67:646 HATPase_c#6
1048-1165 aa · 118 aa · 9.0% of protein
Raw token
HATPase_c:1048:6.99e-29:1165:119:1097 Response_reg#7
1190-1307 aa · 118 aa · 9.0% of protein
Raw token
Response_reg:1190:2.79e-30:1307:118:111- Raw architecture: PAS_3:165:0.0000000000732:243:84:89#PAS_3:302:0.0000000000000122:390:90:89#PAS_3:448:0.00000225:519:74:89#PAS_3:559:0.0000000527:631:74:89#HisKA:936:3.62e-19:1002:67:64#HATPase_c:1048:6.99e-29:1165:119:109#Response_reg:1190:2.79e-30:1307:118:111
- Domain description: 4 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000006.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41897-45835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_04030RefSeq proteinWP_118020437.1
Context group ID
GCF_003463485::NZ_QSDB01000006.1::G00053Context members
DXA34_RS04030
Partner locus tags
DXA34_RS04030
Partner old locus tags
DXA34_04030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118020437.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS04030Primary locus identifier stored in the genes table.
Old locus tagDXA34_04030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000006.1Sequence record reported by the local genomic context database.
Genomic interval41 897-45 835 nt3 939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 897-45 835 ntGCF_003463485::NZ_QSDB01000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000006.1All displayed genes belong to this local TCS context.
Neighborhood span41 897-45 835 nt3 939 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 897 nt45 835 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS04030GCF_003463485#DXA34_RS04030
HKHybridCurrent focus
41 897-45 835 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS04030The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0119874
Simplified PFAM architecture for HKOC_0119874
PFAM domain coverage: 468 / 1312 aa (35.7%)
1 aa1312 aa
PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[165-245] | PAS_3[303-389] | HisKA[936-1002] | HATPase_c[1048-1164] | Response_reg[1190-1305]
- Domain count: 5
- Matched identifier: HKOC_0119874
- Positioned domains: PAS_3 165-245 ; PAS_3 303-389 ; HisKA 936-1002 ; HATPase_c 1048-1164 ; Response_reg 1190-1305
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS04030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key