1 Response_reg#1
11-124 aa · 114 aa · 45.4% of protein
Raw token
Response_reg:11:0.0000000000657:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS09285
Response regulator LytTR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462365#DXD06_RS09285Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 251 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
146-238 aa · 93 aa · 37.1% of protein
Raw token
LytTR:146:0.00000000000000631:238:98:98- Raw architecture: Response_reg:11:0.0000000000657:124:117:111#LytTR:146:0.00000000000000631:238:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462365::NZ_QTYW01000007.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span174309-175064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_09285RefSeq proteinWP_055068777.1
Context group ID
GCF_003462365::NZ_QTYW01000007.1::G00058Context members
DXD06_RS09285
Partner locus tags
DXD06_RS09285
Partner old locus tags
DXD06_09285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068777.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WY98Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WY98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS09285Primary locus identifier stored in the genes table.
Old locus tagDXD06_09285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000007.1Sequence record reported by the local genomic context database.
Genomic interval174 309-175 064 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span174 309-175 064 ntGCF_003462365::NZ_QTYW01000007.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000007.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span174 309-175 064 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 309 nt175 064 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD06_RS09285GCF_003462365#DXD06_RS09285
RRLytTRCurrent focus
174 309-175 064 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS09285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713862
Simplified PFAM architecture for RROC_0713862
PFAM domain coverage: 207 / 251 aa (82.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[11-123] | LytTR[145-238]
- Domain count: 2
- Matched identifier: RROC_0713862
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; LytTR 145-238 ; LytTR 145-238
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS09285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key