1 Response_reg#1
3-112 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:3:6.9e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS03370
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS03370Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:149:1.2e-32:225:77:77- Raw architecture: Response_reg:3:6.9e-35:112:111:111#Trans_reg_C:149:1.2e-32:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span268643-270721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_03375RefSeq proteinWP_022045940.1
Context group ID
GCF_003462365::NZ_QTYW01000002.1::G00016Context members
DXD06_RS03365DXD06_RS03370
Partner locus tags
DXD06_RS03365DXD06_RS03370
Partner old locus tags
DXD06_03370DXD06_03375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022045940.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6W9V2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6W9V2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS03370Primary locus identifier stored in the genes table.
Old locus tagDXD06_03375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000002.1Sequence record reported by the local genomic context database.
Genomic interval270 032-270 721 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span268 643-270 721 ntGCF_003462365::NZ_QTYW01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span268 643-270 721 nt2 079 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
268 643 nt270 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS03365GCF_003462365#DXD06_RS03365
HKClassic
268 643-270 025 nt · Reverse (-)
DXD06_RS03370GCF_003462365#DXD06_RS03370
RROmpRCurrent focus
270 032-270 721 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS09480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253470
Simplified PFAM architecture for RROC_1253470
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1253470
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS09480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key