1 GGDEF#1
136-277 aa · 142 aa · 21.8% of protein
Raw token
GGDEF:136:3.35e-38:277:154:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS07930
Response regulator, RpfG family
Coprococcus comes · GCF_003460315
ClassRRTypeRpfGLength651 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460315#DWX03_RS07930Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length651 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage374 / 651 aa (57.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa651 aa
Domain-by-domain annotation3 items
2 Response_reg#2
306-410 aa · 105 aa · 16.1% of protein
Raw token
Response_reg:306:2.8e-28:410:106:1113 HD#3
473-599 aa · 127 aa · 19.5% of protein
Raw token
HD:473:0.000000000000151:599:127:110- Raw architecture: GGDEF:136:3.35e-38:277:154:160#Response_reg:306:2.8e-28:410:106:111#HD:473:0.000000000000151:599:127:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460315::NZ_QRXJ01000009.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38821-40776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_07930RefSeq proteinWP_117835071.1
Context group ID
GCF_003460315::NZ_QRXJ01000009.1::G00044Context members
DWX03_RS07930
Partner locus tags
DWX03_RS07930
Partner old locus tags
DWX03_07930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117835071.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R5XCH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R5XCH5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS07930Primary locus identifier stored in the genes table.
Old locus tagDWX03_07930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval38 821-40 776 nt1 956 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 821-40 776 ntGCF_003460315::NZ_QRXJ01000009.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000009.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span38 821-40 776 nt1 956 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 821 nt40 776 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX03_RS07930GCF_003460315#DWX03_RS07930
RRRpfGCurrent focus
38 821-40 776 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS07930The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035985
Simplified PFAM architecture for RROC_0035985
PFAM domain coverage: 393 / 651 aa (60.4%)
1 aa651 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-279] | Response_reg[306-417] | HD_5[484-620]
- Domain count: 3
- Matched identifier: RROC_0035985
- Positioned domains: GGDEF 136-279 ; GGDEF 136-279 ; Response_reg 306-417 ; Response_reg 306-417 ; HD_5 484-620 ; HD_5 484-620
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS07930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key