1 HAMP#1
73-141 aa · 69 aa · 17.9% of protein
Raw token
HAMP:73:0.00000000000000645:141:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS07885
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS07885Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 385 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
155-219 aa · 65 aa · 16.9% of protein
Raw token
HisKA:155:6.36e-16:219:65:643 HATPase_c#3
266-379 aa · 114 aa · 29.6% of protein
Raw token
HATPase_c:266:7.82e-32:379:114:109- Raw architecture: HAMP:73:0.00000000000000645:141:69:69#HisKA:155:6.36e-16:219:65:64#HATPase_c:266:7.82e-32:379:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000009.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28897-30736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_07885RefSeq proteinWP_117835059.1
Context group ID
GCF_003460315::NZ_QRXJ01000009.1::G00043Context members
DWX03_RS07880DWX03_RS07885
Partner locus tags
DWX03_RS07880DWX03_RS07885
Partner old locus tags
DWX03_07880DWX03_07885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117835059.1Primary protein accession used for annex mappings.
UniProt accessionA0A412QG43Primary UniProt accession resolved in the annex database.
UniProt IDA0A412QG43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS07885Primary locus identifier stored in the genes table.
Old locus tagDWX03_07885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval29 579-30 736 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 897-30 736 ntGCF_003460315::NZ_QRXJ01000009.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000009.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span28 897-30 736 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 897 nt30 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS07880GCF_003460315#DWX03_RS07880
RROmpR
28 897-29 586 nt · Reverse (-)
DWX03_RS07885GCF_003460315#DWX03_RS07885
HKClassicCurrent focus
29 579-30 736 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS07885The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2566608
Simplified PFAM architecture for HKOC_2566608
PFAM domain coverage: 229 / 385 aa (59.5%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[89-141] | HisKA[154-218] | HATPase_c[267-377]
- Domain count: 3
- Matched identifier: HKOC_2566608
- Positioned domains: HAMP 89-141 ; HisKA 154-218 ; HATPase_c 267-377
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS07885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key