1 HAMP#1
50-120 aa · 71 aa · 20.5% of protein
Raw token
HAMP:50:0.00000000000773:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS06180
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS06180Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 347 aa (70.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.2% of protein
Raw token
HisKA:127:4.79e-16:189:63:643 HATPase_c#3
233-343 aa · 111 aa · 32.0% of protein
Raw token
HATPase_c:233:3.29e-28:343:111:109- Raw architecture: HAMP:50:0.00000000000773:120:71:69#HisKA:127:4.79e-16:189:63:64#HATPase_c:233:3.29e-28:343:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000007.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3069-4822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_06180RefSeq proteinWP_117834786.1
Context group ID
GCF_003460315::NZ_QRXJ01000007.1::G00038Context members
DWX03_RS06175DWX03_RS06180
Partner locus tags
DWX03_RS06175DWX03_RS06180
Partner old locus tags
DWX03_06175DWX03_06180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117834786.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R5XCZ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R5XCZ3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS06180Primary locus identifier stored in the genes table.
Old locus tagDWX03_06180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000007.1Sequence record reported by the local genomic context database.
Genomic interval3 779-4 822 nt1 044 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 069-4 822 ntGCF_003460315::NZ_QRXJ01000007.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000007.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 069-4 822 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 069 nt4 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS06175GCF_003460315#DWX03_RS06175
RROmpR
3 069-3 779 nt · Forward (+)
DWX03_RS06180GCF_003460315#DWX03_RS06180
HKClassicCurrent focus
3 779-4 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS06180The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2811508
Simplified PFAM architecture for HKOC_2811508
PFAM domain coverage: 222 / 347 aa (64.0%)
1 aa347 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-120] | HisKA[126-188] | HATPase_c[235-342]
- Domain count: 3
- Matched identifier: HKOC_2811508
- Positioned domains: HAMP 70-120 ; HisKA 126-188 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS06180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key