1 HAMP#1
293-362 aa · 70 aa · 11.8% of protein
Raw token
HAMP:293:0.00000000000146:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS04755
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS04755Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 593 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-451 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:377:9.88e-35:451:75:803 HATPase_c#3
472-584 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:472:0.0000000000901:584:113:109- Raw architecture: HAMP:293:0.00000000000146:362:70:69#His_kinase:377:9.88e-35:451:75:80#HATPase_c:472:0.0000000000901:584:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000005.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53191-56567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_04755RefSeq proteinWP_117557092.1
Context group ID
GCF_003460315::NZ_QRXJ01000005.1::G00032Context members
DWX03_RS04755DWX03_RS04760
Partner locus tags
DWX03_RS04755DWX03_RS04760
Partner old locus tags
DWX03_04755DWX03_04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117557092.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4GQW2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4GQW2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS04755Primary locus identifier stored in the genes table.
Old locus tagDWX03_04755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval53 191-54 972 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 191-56 567 ntGCF_003460315::NZ_QRXJ01000005.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000005.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span53 191-56 567 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 191 nt56 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS04755GCF_003460315#DWX03_RS04755
HKClassicCurrent focus
53 191-54 972 nt · Reverse (-)
DWX03_RS04760GCF_003460315#DWX03_RS04760
RRunclassified
54 969-56 567 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436145#DXD67_RS06385Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1094388
Simplified PFAM architecture for HKOC_1094388
PFAM domain coverage: 241 / 593 aa (40.6%)
1 aa593 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-361] | His_kinase[378-453] | HATPase_c[472-585]
- Domain count: 3
- Matched identifier: HKOC_1094388
- Positioned domains: HAMP 311-361 ; His_kinase 378-453 ; HATPase_c 472-585
Cluster members and taxonomy
Representative gene: GCF_003436145#DXD67_RS06385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key