1 HisKA#1
92-153 aa · 62 aa · 20.1% of protein
Raw token
HisKA:92:0.0000000000528:153:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS04665
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS04665Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 309 aa (55.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-306 aa · 108 aa · 35.0% of protein
Raw token
HATPase_c:199:9.64e-28:306:108:109- Raw architecture: HisKA:92:0.0000000000528:153:62:64#HATPase_c:199:9.64e-28:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000005.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33967-35552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_04665RefSeq proteinWP_117557070.1
Context group ID
GCF_003460315::NZ_QRXJ01000005.1::G00031Context members
DWX03_RS04665DWX03_RS04670
Partner locus tags
DWX03_RS04665DWX03_RS04670
Partner old locus tags
DWX03_04665DWX03_04670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117557070.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4GQW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4GQW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS04665Primary locus identifier stored in the genes table.
Old locus tagDWX03_04665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval33 967-34 896 nt930 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 967-35 552 ntGCF_003460315::NZ_QRXJ01000005.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000005.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span33 967-35 552 nt1 586 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 967 nt35 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS04665GCF_003460315#DWX03_RS04665
HKClassicCurrent focus
33 967-34 896 nt · Reverse (-)
DWX03_RS04670GCF_003460315#DWX03_RS04670
RROmpR
34 884-35 552 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436145#DXD67_RS06305Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879436
Simplified PFAM architecture for HKOC_2879436
PFAM domain coverage: 171 / 309 aa (55.3%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[92-153] | HATPase_c[199-307]
- Domain count: 2
- Matched identifier: HKOC_2879436
- Positioned domains: HisKA 92-153 ; HATPase_c 199-307
Cluster members and taxonomy
Representative gene: GCF_003436145#DXD67_RS06305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key