1 Response_reg#1
5-115 aa · 111 aa · 38.9% of protein
Raw token
Response_reg:5:6.5e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS04605
Response regulator, unclassified
Coprococcus comes · GCF_003460315
ClassRRTypeunclassifiedLength285 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460315#DWX03_RS04605Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length285 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 285 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa285 aa
Domain-by-domain annotation2 items
2 YcbB#2
158-277 aa · 120 aa · 42.1% of protein
Raw token
YcbB:158:8.71e-44:277:131:131- Raw architecture: Response_reg:5:6.5e-23:115:111:111#YcbB:158:8.71e-44:277:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460315::NZ_QRXJ01000005.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21362-22219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_04605RefSeq proteinWP_117557052.1
Context group ID
GCF_003460315::NZ_QRXJ01000005.1::G00030Context members
DWX03_RS04605
Partner locus tags
DWX03_RS04605
Partner old locus tags
DWX03_04605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117557052.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4GQT9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4GQT9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS04605Primary locus identifier stored in the genes table.
Old locus tagDWX03_04605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval21 362-22 219 nt858 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 362-22 219 ntGCF_003460315::NZ_QRXJ01000005.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000005.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span21 362-22 219 nt858 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 362 nt22 219 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX03_RS04605GCF_003460315#DWX03_RS04605
RRunclassifiedCurrent focus
21 362-22 219 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436145#DXD67_RS06245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0591451
Simplified PFAM architecture for RROC_0591451
PFAM domain coverage: 227 / 285 aa (79.6%)
1 aa285 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-112] | YcbB[159-277]
- Domain count: 2
- Matched identifier: RROC_0591451
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; YcbB 159-277 ; YcbB 159-277
Cluster members and taxonomy
Representative gene: GCF_003436145#DXD67_RS06245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key