1 Response_reg#1
5-115 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:5:6.47e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS02495
Response regulator OmpR family
Coprococcus comes · GCF_003460315
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460315#DWX03_RS02495Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:150:1.81e-34:226:77:77- Raw architecture: Response_reg:5:6.47e-32:115:111:111#Trans_reg_C:150:1.81e-34:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460315::NZ_QRXJ01000002.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span247890-248576Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_02495RefSeq proteinWP_008371972.1
Context group ID
GCF_003460315::NZ_QRXJ01000002.1::G00021Context members
DWX03_RS02495
Partner locus tags
DWX03_RS02495
Partner old locus tags
DWX03_02495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008371972.1Primary protein accession used for annex mappings.
UniProt accessionC0B8M9Primary UniProt accession resolved in the annex database.
UniProt IDC0B8M9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS02495Primary locus identifier stored in the genes table.
Old locus tagDWX03_02495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval247 890-248 576 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 890-248 576 ntGCF_003460315::NZ_QRXJ01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span247 890-248 576 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 890 nt248 576 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX03_RS02495GCF_003460315#DWX03_RS02495
RROmpRCurrent focus
247 890-248 576 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436145#DXD67_RS01305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314828
Simplified PFAM architecture for RROC_1314828
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1314828
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_003436145#DXD67_RS01305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key