1 HisKA#1
144-207 aa · 64 aa · 17.5% of protein
Raw token
HisKA:144:0.0000000000286:207:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS06710
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003457945
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS06710Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 365 aa (47.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
257-364 aa · 108 aa · 29.6% of protein
Raw token
HATPase_c:257:1.24e-21:364:109:109- Raw architecture: HisKA:144:0.0000000000286:207:64:64#HATPase_c:257:1.24e-21:364:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52884-54654Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_06705RefSeq proteinWP_003536080.1
Context group ID
GCF_003457945::NZ_QRTG01000006.1::G00026Context members
DWY94_RS06710DWY94_RS06715
Partner locus tags
DWY94_RS06710DWY94_RS06715
Partner old locus tags
DWY94_06705DWY94_06710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003536080.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS06710Primary locus identifier stored in the genes table.
Old locus tagDWY94_06705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000006.1Sequence record reported by the local genomic context database.
Genomic interval52 884-53 981 nt1 098 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 884-54 654 ntGCF_003457945::NZ_QRTG01000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span52 884-54 654 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 884 nt54 654 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS06710GCF_003457945#DWY94_RS06710
HKClassicCurrent focus
52 884-53 981 nt · Reverse (-)
DWY94_RS06715GCF_003457945#DWY94_RS06715
RROmpR
53 962-54 654 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457945#DWY94_RS06710The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719940
Simplified PFAM architecture for HKOC_2719940
PFAM domain coverage: 172 / 365 aa (47.1%)
1 aa365 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[144-207] | HATPase_c[257-364]
- Domain count: 2
- Matched identifier: HKOC_2719940
- Positioned domains: HisKA 144-207 ; HATPase_c 257-364
Cluster members and taxonomy
Representative gene: GCF_003457945#DWY94_RS06710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key