1 HAMP#1
304-373 aa · 70 aa · 11.6% of protein
Raw token
HAMP:304:0.0000000000000133:373:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS03770
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003457945
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS03770Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 604 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 His_kinase#2
388-467 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:388:4.2e-28:467:80:803 HATPase_c#3
483-591 aa · 109 aa · 18.0% of protein
Raw token
HATPase_c:483:6.42e-18:591:109:109- Raw architecture: HAMP:304:0.0000000000000133:373:70:69#His_kinase:388:4.2e-28:467:80:80#HATPase_c:483:6.42e-18:591:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27475-30805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_03770RefSeq proteinWP_118248427.1
Context group ID
GCF_003457945::NZ_QRTG01000003.1::G00015Context members
DWY94_RS03770DWY94_RS03775
Partner locus tags
DWY94_RS03770DWY94_RS03775
Partner old locus tags
DWY94_03770DWY94_03775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118248427.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS03770Primary locus identifier stored in the genes table.
Old locus tagDWY94_03770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000003.1Sequence record reported by the local genomic context database.
Genomic interval27 475-29 289 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 475-30 805 ntGCF_003457945::NZ_QRTG01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span27 475-30 805 nt3 331 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 475 nt30 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS03770GCF_003457945#DWY94_RS03770
HKClassicCurrent focus
27 475-29 289 nt · Forward (+)
DWY94_RS03775GCF_003457945#DWY94_RS03775
RRunclassified
29 267-30 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS02545Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033761
Simplified PFAM architecture for HKOC_1033761
PFAM domain coverage: 240 / 604 aa (39.7%)
1 aa604 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[322-372] | His_kinase[388-466] | HATPase_c[483-592]
- Domain count: 3
- Matched identifier: HKOC_1033761
- Positioned domains: HAMP 322-372 ; His_kinase 388-466 ; HATPase_c 483-592
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key