1 PAS_3#1
34-107 aa · 74 aa · 11.2% of protein
Raw token
PAS_3:34:0.0000575:107:78:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS11170
Histidine kinase, Hybrid
Blautia obeum · GCF_003457595
ClassHKTypeHybridLength661 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457595#DWZ12_RS11170Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage372 / 661 aa (56.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 HisKA#2
285-351 aa · 67 aa · 10.1% of protein
Raw token
HisKA:285:0.0000000000000287:351:67:643 HATPase_c#3
398-512 aa · 115 aa · 17.4% of protein
Raw token
HATPase_c:398:5.38e-29:512:115:1094 Response_reg#4
539-654 aa · 116 aa · 17.5% of protein
Raw token
Response_reg:539:1.94e-32:654:116:111- Raw architecture: PAS_3:34:0.0000575:107:78:89#HisKA:285:0.0000000000000287:351:67:64#HATPase_c:398:5.38e-29:512:115:109#Response_reg:539:1.94e-32:654:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457595::NZ_QRSS01000012.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span90978-92963Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_11165RefSeq proteinWP_118044776.1
Context group ID
GCF_003457595::NZ_QRSS01000012.1::G00006Context members
DWZ12_RS11170
Partner locus tags
DWZ12_RS11170
Partner old locus tags
DWZ12_11165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044776.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZMV9Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZMV9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS11170Primary locus identifier stored in the genes table.
Old locus tagDWZ12_11165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000012.1Sequence record reported by the local genomic context database.
Genomic interval90 978-92 963 nt1 986 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 978-92 963 ntGCF_003457595::NZ_QRSS01000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span90 978-92 963 nt1 986 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 978 nt92 963 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ12_RS11170GCF_003457595#DWZ12_RS11170
HKHybridCurrent focus
90 978-92 963 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS11170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870313
Simplified PFAM architecture for HKOC_0870313
PFAM domain coverage: 299 / 661 aa (45.2%)
1 aa661 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[285-351] | HATPase_c[398-513] | Response_reg[539-654]
- Domain count: 3
- Matched identifier: HKOC_0870313
- Positioned domains: HisKA 285-351 ; HATPase_c 398-513 ; Response_reg 539-654
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS11170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key