1 dCache_1#1
188-288 aa · 101 aa · 17.0% of protein
Raw token
dCache_1:188:0.0000074:288:109:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS10305
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457595#DWZ12_RS10305Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 595 aa (58.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
309-375 aa · 67 aa · 11.3% of protein
Raw token
HAMP:309:0.000000000000013:375:67:693 His_kinase#3
390-469 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:390:1.42e-29:469:80:804 HATPase_c#4
488-589 aa · 102 aa · 17.1% of protein
Raw token
HATPase_c:488:0.00000000243:589:106:109- Raw architecture: dCache_1:188:0.0000074:288:109:195#HAMP:309:0.000000000000013:375:67:69#His_kinase:390:1.42e-29:469:80:80#HATPase_c:488:0.00000000243:589:106:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457595::NZ_QRSS01000011.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span11047-12834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_10300RefSeq proteinWP_118044740.1
Context group ID
GCF_003457595::NZ_QRSS01000011.1::G00003Context members
DWZ12_RS10305
Partner locus tags
DWZ12_RS10305
Partner old locus tags
DWZ12_10300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044740.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZN58Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZN58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS10305Primary locus identifier stored in the genes table.
Old locus tagDWZ12_10300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000011.1Sequence record reported by the local genomic context database.
Genomic interval11 047-12 834 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 047-12 834 ntGCF_003457595::NZ_QRSS01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span11 047-12 834 nt1 788 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 047 nt12 834 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ12_RS10305GCF_003457595#DWZ12_RS10305
HKClassicCurrent focus
11 047-12 834 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS10305The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081851
Simplified PFAM architecture for HKOC_1081851
PFAM domain coverage: 232 / 595 aa (39.0%)
1 aa595 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[325-374] | His_kinase[390-468] | HATPase_c[488-590]
- Domain count: 3
- Matched identifier: HKOC_1081851
- Positioned domains: HAMP 325-374 ; His_kinase 390-468 ; HATPase_c 488-590
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS10305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key