1 HAMP#1
193-261 aa · 69 aa · 13.5% of protein
Raw token
HAMP:193:8.83e-16:261:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS09215
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS09215Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 510 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
286-353 aa · 68 aa · 13.3% of protein
Raw token
HisKA:286:0.0000000000000014:353:68:643 HATPase_c#3
398-509 aa · 112 aa · 22.0% of protein
Raw token
HATPase_c:398:2.9e-19:509:113:109- Raw architecture: HAMP:193:8.83e-16:261:69:69#HisKA:286:0.0000000000000014:353:68:64#HATPase_c:398:2.9e-19:509:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000009.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60626-62838Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_09215RefSeq proteinWP_117591466.1
Context group ID
GCF_003457595::NZ_QRSS01000009.1::G00049Context members
DWZ12_RS09215DWZ12_RS09220
Partner locus tags
DWZ12_RS09215DWZ12_RS09220
Partner old locus tags
DWZ12_09215DWZ12_09220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117591466.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5EP98Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5EP98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS09215Primary locus identifier stored in the genes table.
Old locus tagDWZ12_09215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000009.1Sequence record reported by the local genomic context database.
Genomic interval60 626-62 158 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 626-62 838 ntGCF_003457595::NZ_QRSS01000009.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000009.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000009.1All displayed genes belong to this local TCS context.
Neighborhood span60 626-62 838 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 626 nt62 838 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS09215GCF_003457595#DWZ12_RS09215
HKClassicCurrent focus
60 626-62 158 nt · Reverse (-)
DWZ12_RS09220GCF_003457595#DWZ12_RS09220
RROmpR
62 155-62 838 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS09215The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1429161
Simplified PFAM architecture for HKOC_1429161
PFAM domain coverage: 230 / 510 aa (45.1%)
1 aa510 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[209-260] | HisKA[286-353] | HATPase_c[399-508]
- Domain count: 3
- Matched identifier: HKOC_1429161
- Positioned domains: HAMP 209-260 ; HisKA 286-353 ; HATPase_c 399-508
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS09215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key