1 Response_reg#1
4-116 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:4:4.08e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS07880
Response regulator, unclassified
Blautia obeum · GCF_003457595
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS07880Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 518 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-464 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:431:0.00000248:464:34:423 HTH_AraC#3
479-513 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:479:0.000000536:513:35:42- Raw architecture: Response_reg:4:4.08e-28:116:113:111#HTH_AraC:431:0.00000248:464:34:42#HTH_AraC:479:0.000000536:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000007.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107651-111060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_07880RefSeq proteinWP_117592490.1
Context group ID
GCF_003457595::NZ_QRSS01000007.1::G00045Context members
DWZ12_RS07875DWZ12_RS07880
Partner locus tags
DWZ12_RS07875DWZ12_RS07880
Partner old locus tags
DWZ12_07875DWZ12_07880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117592490.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5EIW4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5EIW4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS07880Primary locus identifier stored in the genes table.
Old locus tagDWZ12_07880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000007.1Sequence record reported by the local genomic context database.
Genomic interval109 504-111 060 nt1 557 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 651-111 060 ntGCF_003457595::NZ_QRSS01000007.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000007.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span107 651-111 060 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 651 nt111 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS07875GCF_003457595#DWZ12_RS07875
HKClassic
107 651-109 507 nt · Reverse (-)
DWZ12_RS07880GCF_003457595#DWZ12_RS07880
RRunclassifiedCurrent focus
109 504-111 060 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS07880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129539
Simplified PFAM architecture for RROC_0129539
PFAM domain coverage: 191 / 518 aa (36.9%)
1 aa518 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[438-515]
- Domain count: 2
- Matched identifier: RROC_0129539
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 438-515 ; HTH_18 438-515
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS07880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key