1 Response_reg#1
3-110 aa · 108 aa · 46.0% of protein
Raw token
Response_reg:3:7.35e-19:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS06495
Response regulator LytTR family
Blautia obeum · GCF_003457595
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457595#DWZ12_RS06495Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 235 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-226 aa · 91 aa · 38.7% of protein
Raw token
LytTR:136:4.28e-17:226:96:98- Raw architecture: Response_reg:3:7.35e-19:110:112:111#LytTR:136:4.28e-17:226:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457595::NZ_QRSS01000006.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13689-14396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_06500RefSeq proteinWP_117639893.1
Context group ID
GCF_003457595::NZ_QRSS01000006.1::G00041Context members
DWZ12_RS06495
Partner locus tags
DWZ12_RS06495
Partner old locus tags
DWZ12_06500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117639893.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FXA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FXA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS06495Primary locus identifier stored in the genes table.
Old locus tagDWZ12_06500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000006.1Sequence record reported by the local genomic context database.
Genomic interval13 689-14 396 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 689-14 396 ntGCF_003457595::NZ_QRSS01000006.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000006.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000006.1All displayed genes belong to this local TCS context.
Neighborhood span13 689-14 396 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 689 nt14 396 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ12_RS06495GCF_003457595#DWZ12_RS06495
RRLytTRCurrent focus
13 689-14 396 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS15400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024447
Simplified PFAM architecture for RROC_1024447
PFAM domain coverage: 199 / 235 aa (84.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1024447
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS15400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key