1 HAMP#1
283-349 aa · 67 aa · 11.8% of protein
Raw token
HAMP:283:0.000000000117:349:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS05270
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS05270Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:365:1.24e-27:443:79:803 HATPase_c#3
461-561 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:461:0.000000000000428:561:110:109- Raw architecture: HAMP:283:0.000000000117:349:67:69#His_kinase:365:1.24e-27:443:79:80#HATPase_c:461:0.000000000000428:561:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span240363-243579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_05275RefSeq proteinWP_181976028.1
Context group ID
GCF_003457595::NZ_QRSS01000004.1::G00038Context members
DWZ12_RS05265DWZ12_RS05270
Partner locus tags
DWZ12_RS05265DWZ12_RS05270
Partner old locus tags
DWZ12_05270DWZ12_05275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181976028.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS05270Primary locus identifier stored in the genes table.
Old locus tagDWZ12_05275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000004.1Sequence record reported by the local genomic context database.
Genomic interval241 876-243 579 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span240 363-243 579 ntGCF_003457595::NZ_QRSS01000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span240 363-243 579 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
240 363 nt243 579 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS05265GCF_003457595#DWZ12_RS05265
RRunclassified
240 363-241 892 nt · Forward (+)
DWZ12_RS05270GCF_003457595#DWZ12_RS05270
HKClassicCurrent focus
241 876-243 579 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS05270The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1226054
Simplified PFAM architecture for HKOC_1226054
PFAM domain coverage: 225 / 567 aa (39.7%)
1 aa567 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[298-348] | His_kinase[365-438] | HATPase_c[462-561]
- Domain count: 3
- Matched identifier: HKOC_1226054
- Positioned domains: HAMP 298-348 ; His_kinase 365-438 ; HATPase_c 462-561
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS05270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key