1 sCache_like#1
62-131 aa · 70 aa · 15.8% of protein
Raw token
sCache_like:62:0.00000157:131:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS04080
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS04080Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 443 aa (55.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-290 aa · 65 aa · 14.7% of protein
Raw token
HisKA:226:2.47e-17:290:65:643 HATPase_c#3
335-443 aa · 109 aa · 24.6% of protein
Raw token
HATPase_c:335:7.74e-26:443:109:109- Raw architecture: sCache_like:62:0.00000157:131:70:114#HisKA:226:2.47e-17:290:65:64#HATPase_c:335:7.74e-26:443:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247036-249037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_04085RefSeq proteinWP_118044409.1
Context group ID
GCF_003457595::NZ_QRSS01000003.1::G00035Context members
DWZ12_RS04075DWZ12_RS04080
Partner locus tags
DWZ12_RS04075DWZ12_RS04080
Partner old locus tags
DWZ12_04080DWZ12_04085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044409.1Primary protein accession used for annex mappings.
UniProt accessionA0A414KJD8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414KJD8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS04080Primary locus identifier stored in the genes table.
Old locus tagDWZ12_04085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000003.1Sequence record reported by the local genomic context database.
Genomic interval247 706-249 037 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 036-249 037 ntGCF_003457595::NZ_QRSS01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span247 036-249 037 nt2 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 036 nt249 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS04075GCF_003457595#DWZ12_RS04075
RROmpR
247 036-247 704 nt · Forward (+)
DWZ12_RS04080GCF_003457595#DWZ12_RS04080
HKClassicCurrent focus
247 706-249 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS04080The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2043944
Simplified PFAM architecture for HKOC_2043944
PFAM domain coverage: 168 / 443 aa (37.9%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[226-290] | HATPase_c[339-441]
- Domain count: 2
- Matched identifier: HKOC_2043944
- Positioned domains: HisKA 226-290 ; HATPase_c 339-441
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS04080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key