1 Response_reg#1
3-117 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:3:0.00000000000000531:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS03090
Response regulator LytTR family
Blautia obeum · GCF_003457595
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457595#DWZ12_RS03090Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 235 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 39.1% of protein
Raw token
LytTR:139:0.000000000000187:230:97:98- Raw architecture: Response_reg:3:0.00000000000000531:117:117:111#LytTR:139:0.000000000000187:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457595::NZ_QRSS01000003.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38955-39662Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_03095RefSeq proteinWP_015543174.1
Context group ID
GCF_003457595::NZ_QRSS01000003.1::G00031Context members
DWZ12_RS03090
Partner locus tags
DWZ12_RS03090
Partner old locus tags
DWZ12_03095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015543174.1Primary protein accession used for annex mappings.
UniProt accessionD4LUG4Primary UniProt accession resolved in the annex database.
UniProt IDD4LUG4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS03090Primary locus identifier stored in the genes table.
Old locus tagDWZ12_03095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000003.1Sequence record reported by the local genomic context database.
Genomic interval38 955-39 662 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 955-39 662 ntGCF_003457595::NZ_QRSS01000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span38 955-39 662 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 955 nt39 662 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ12_RS03090GCF_003457595#DWZ12_RS03090
RRLytTRCurrent focus
38 955-39 662 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS06095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016689
Simplified PFAM architecture for RROC_1016689
PFAM domain coverage: 203 / 235 aa (86.4%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_1016689
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS06095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key